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Preheat oven to 375 °F/195°C. Line muffin pan with muffin liners.
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Melt the chocolate chips in the microwave in 30 sec intervals, mixing in between until fully melted. Set aside to cool down.
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To make the muffins
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Mix flour, baking powder, and salt in a large bowl.
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In a separate bowl whisk together sugar and eggs. Add the cream cheese, yogurt, oil, and vanilla, keep whisking until the mixture is pale and fluffy.
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Fold the wet ingredients into the dry ones, mix well.
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Pour the melted chocolate on top of muffin dough. With a wooden spoon swirl melted chocolate into batter.
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Spoon batter into prepared muffin tins, filling about ⅔ of each cup.
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Place them in the oven and bake for 18-20 minutes or until the toothpick inserted in the center comes out clean.
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Cool for 5 minutes in the pan then remove muffins and cool on a wire rack.